Wednesday 21-Jun-23
12:00 – 7:00 PM Arrival and check-in – Pick up from University Park Airport, State College, or Pittsburgh International Airport (send us your flight details)
5:00 – 7:00 PM DINNER
7:00 – 9:00 PM Introductions: participants and faculty 5 min student presentation of interest and background ( <3 slides)
Thursday 22-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 – 9:30 AM Welcome and Housekeeping Course Faculty
9:30 – 10:00 AM Walk-through of topics for the rest of the course Klaus Koepfli, Eduardo Eizrik, Taras Oleksyk
10:00 – 10:55 AM Lecture: Anne Schmidt-Kuntzel 1
11:00 AM – 11:55 AM Lecture: Klaus Koepfli 1
12:00 – 1:00 PM LUNCH
1:00 – 2:30 PM Tutorial: Introduction to Unix Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
2:30 – 3:00 PM BREAK
3:00 – 5:00 PM Tutorial: Sequence quality control Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
6:00 – 7:00 PM DINNER
7:30 – 8:30 PM Evening Lecture: Steve O’Brien
Friday 23-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 – 9:55 AM Lecture: Anne Schmidt-Kuntzel 2
10:00 AM – 10:55 AM Lecture: Taras Oleksyk 1
11:00 AM – 11:55 AM Lecture: OPEN
12:00 – 1:00 PM LUNCH
1:00 – 2:30 PM Tutorial: Genome assembly 1 Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
2:30 – 3:00 PM BREAK
3:00 – 5:00 PM Tutorial: Genome assembly 2 and evaluating genome assemblies Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
6:00 – 7:00 PM DINNER
7:30 – 8:30 PM Evening Lecture: Oliver Ryder 1
Saturday 24-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 – 9:55 AM Lecture: Eduardo Eizirik 1
10:00 AM – 10:55 AM Lecture: Oliver Ryder 2
11:00 AM – 11:55 AM Lecture: Cynthia Steiner
12:00 – 1:00 PM LUNCH
1:00 – 2:30 PM Tutorial: Genome annotation 1 Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
2:30 – 3:00 PM BREAK
3:00 – 5:00 PM Tutorial: Genome annotation 2 Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
6:00 – 7:00 PM DINNER
7:30 – 8:30 PM Evening Lecture: Fred Allendorf 1
Sunday 25-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 – 9:55 AM Lecture: Laurie Goodman 1
10:00 – 10:55 AM Lecture: Fred Allendorf 2
11:00 AM – 11:55 AM Lecture: Scott Baker 1
12:00 – 1:00 PM LUNCH
1:00 – 2:30 PM Tutorial: Read mapping and variant calling 1 Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
2:30 – 3:00 PM BREAK
3:00 – 5:00 PM Tutorial: Read mapping and variant calling 2 Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
6:00 – 9:00 PM Mid-Course Dinner and Party
Monday 26-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 AM – 3:00 PM ACTIVITY/TOUR: Pittsburgh Zoo & Aquarium International Conservation Center, Somerset, PA?
3:00 – 6:00 PM Free time
6:00 – 7:00 PM DINNER
7:30 – 8:30 PM Evening Lecture: Laurie Goodman 1
Tuesday 27-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 AM – 9:55 AM Lecture: Scott Baker 2
10:00 AM – 10:55 AM Lecture: Laurie Goodman 2
11:00 AM – 11:55 AM Lecture: Taras Oleksyk 1
12:00 – 1:00 PM LUNCH
1:00 – 2:30 PM Tutorial: Population structure and admixture Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
2:30 – 3:00 PM BREAK
3:00 – 5:00 PM Tutorial: Hybridization and introgression Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
6:00 – 7:00 PM DINNER
7:30 – 8:30 PM Evening Lecture: Al Roca 1
Wednesday 28-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 AM – 9:55 AM Lecture: Laurie Marker (via Zoom)
10:00 AM – 10:55 AM Lecture: Al Roca 2
11:00 AM – 11:55 AM Lecture: Beth Shapiro 2?
12:00 – 1:00 PM LUNCH
1:00 – 2:30 PM Tutorial: Genome-wide heterozygosity, SNV density, visualization Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
2:30 – 3:00 PM BREAK
3:00 – 5:00 PM Tutorial: Inbreeding and runs of homozygosity Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
6:00 – 7:00 PM DINNER
7:30 – 8:30 PM Evening Lecture: Rachel Nuwer
Thursday 29-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 – 9:55 AM Lecture: Joe Lopez
10:00 AM – 10:55 AM Lecture: Audrey Majesky
11:00 AM – 11:55 AM Lecture: Agostinho Antunes
12:00 – 1:00 PM LUNCH
1:00 – 2:30 PM Tutorial: Detecting deleterious variants Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
2:30 – 3:00 PM BREAK
3:00 – 5:00 PM Tutorial: Analyzing deleterious variants Pavel Dobrynin, Henrique Figueiro, Gaik Tamazian, and/or Walter Wolfsberger
6:00 – 7:00 PM DINNER
7:30 – 8:30 PM Evening Lecture: Bill Murphy 1
Friday 30-Jun-23
8:00 – 9:00 AM BREAKFAST
9:00 – 9:55 AM Lecture: Carlos Driscoll
10:00 AM – 10:55 AM Lecture: Bill Murphy 2
11:00 AM – 11:55 AM Lecture: Polina Perelman
12:00 – 1:00 PM LUNCH
1:00 – 2:30 PM Tutorial: Historical demographic inference 1 Ekaterina Noskova and Pavel Dobrynin
2:30 – 3:00 PM BREAK
3:00 – 4:30 PM Tutorial: Historical demographic inference 2 Ekaterina Noskova and Pavel Dobrynin
4:30 – 5:00 PM BREAK
5:00 – 6:00 PM Evening Lecture: Steve O’Brien
6:00 – 10:00 PM Dinner and Closing Party
Saturday 1-Jul-23
8:00 – 9:00 AM BREAKFAST
9:00 – 10:00 AM Group Discussion: Career paths Course Faculty
10:00 AM – 11:00 AM Course evaluation
11:00 – 11:15 AM Group Photo
11:15 AM – 12:00 PM Pack up and clean up rooms
12:00 PM Check out and departure – Depart for University Park Airport, State College, or Pittsburgh International Airport